Accueil > Recherche > Publications

Publications de l'ARN depuis 1992



André C., Martiel I., Wolff P., Landolfo M., Lorber B., Silva da Veiga C., Dejaegere A., Dumas P., Guichard G., Olieric V., Wagner J.G., Burnouf D.Y.
Interaction of a Model Peptide on Gram Negative and Gram Positive Bacterial Sliding Clamps
ACS Infect Dis 2019, 5(6), 1022-1034

Antoine L., Wolff P., Westhof E., Romby P., Marzi S.
Mapping post-transcriptional modifications in Staphylococcus aureus tRNAs by nanoLC/MSMS
Biochimie 2019, 164, 60-69

Autour A., Bouhedda F., Cubi R., Ryckelynck M.
Optimization of fluorogenic RNA-based biosensors using droplet-based microfluidic ultrahigh-throughput screening
Methods 2019, 161, 46-53

Bronesky D., Desgranges E., Corvaglia A., François P., Caballero C.J., Prado L., Toledo-Arana A., Lasa I., Moreau K., Vandenesch F., Marzi S., Romby P., Caldelari I.
A multifaceted small RNA modulates gene expression upon glucose limitation in Staphylococcus aureus
EMBO J 2019, 38(6), e99363

Chagot M.E., Quinternet M., Rothé B., Charpentier B., Coutant J., Manival X., Lebars I.
The yeast C/D box snoRNA U14 adopts a "weak" K-turn like conformation recognized by the Snu13 core protein in solution
Biochimie 2019, 164, 70-82

de Wijn R., Hennig O., Roche J., Engilberge S., Rollet K., Fernandez-Millan P., Brillet K., Betat H., Mörl M., Roussel A., Girard E., Mueller-Dieckmann C., Fox G.C., Olieric V., Gavira J.A., Lorber B., Sauter C.
A simple and versatile microfluidic device for efficient biomacromolecule crystallization and structural analysis by serial crystallography
IUCrJ 2019, 6(Pt 3), 454-464

Desgranges E., Bronesky D., Corvaglia A., François P., Caballero C., Prado L., Toledo-Arana A., Lasa I., Moreau K., Vandenesch F., Marzi S., Romby P., Caldelari I.
[RsaI, a multifaceted regulatory RNA, modulates the metabolism of the opportunistic pathogen Staphylococcus aureus]
Med Sci (Paris) 2019, 35(12), 1221-1223

Desgranges E., Marzi S., Moreau K., Romby P., Caldelari I.
Noncoding RNA
Microbiol Spectr 2019, 7(2), 1-2

Ennifar E., Ed.
Microcalorimetry of Biological Molecules: Methods and Protocols
Methods in Molecular Biology 2019, Vol. 1964, Springer Protocols, Humana Press , New York, NY

Florentz C., Giege R.
History of tRNA research in Strasbourg
IUBMB Life 2019, 71(8), 1066-1087

González-Serrano L.E., Chihade J.W., Sissler M.
When a common biological role does not imply common disease outcomes: Disparate pathology linked to human mitochondrial aminoacyl-tRNA synthetases
J Biol Chem 2019, 294(14), 5309-5320

Grassart A., Malardé V., Gobaa S., Sartori-Rupp A., Kerns J., Karalis K., Marteyn B., Sansonetti P., Sauvonnet N.
Bioengineered Human Organ-on-Chip Reveals Intestinal Microenvironment and Mechanical Forces Impacting Shigella Infection
Cell Host Microbe 2019, 26(3), 435-444.e4

Grassart A., Malardé V., Gobaa S., Sartori-Rupp A., Kerns J., Karalis K., Marteyn B., Sansonetti P., Sauvonnet N.
Erratum for: Bioengineered Human Organ-on-Chip Reveals Intestinal Microenvironment and Mechanical Forces Impacting Shigella Infection
Cell Host Microbe 2019, 26(4), 565

Injarabian L., Devin A., Ransac S., Marteyn B.S.
Neutrophil Metabolic Shift during their Lifecycle: Impact on their Survival and Activation
Int J Mol Sci 2019, 21(1), 287

Jackson C.B., Huemer M., Bolognini R., Martin F., Szinnai G., Donner B.C., Richter U., Battersby B.J., Nuoffer J.M., Suomalainen A., Schaller A.
A variant in MRPS14 (uS14m) causes perinatal hypertrophic cardiomyopathy with neonatal lactic acidosis, growth retardation, dysmorphic features and neurological involvement
Hum Mol Genet 2019, 28(4), 639-649

Janvier A., Despons L., Schaeffer L., Tidu A., Martin F., Eriani G.
A tRNA-mimic Strategy to Explore the Role of G34 of tRNAGly in Translation and Codon Frameshifting
Int J Mol Sci 2019, 20(16), 3911

Kalloush R.M., Vivet-Boudou V., Ali L.M., Pillai V., Mustafa F., Marquet R., Rizvi T.A.
Stabilizing role of structural elements within the 5´ Untranslated Region (UTR) and gag sequences in Mason-Pfizer monkey virus (MPMV) genomic RNA packaging
RNA Biol 2019, 16(5), 612-625

Krishnan A., Pillai V., Chameettachal A., Ali L.M., Nuzra Nagoor Pitchai F., Tariq S., Mustafa F., Marquet R., Rizvi T.A.
Purification and Functional Characterization of a Biologically Active Full-Length Feline Immunodeficiency Virus (FIV) Pr50Gag
Viruses 2019, 11(8), 689

Kruse H., Sponer J., Auffinger P.
Comment on "Evaluating Unexpectedly Short Non-covalent Distances in X-ray Crystal Structures of Proteins with Electronic Structure Analysis"
J Chem Inf Model 2019, 59(9), 3605-3608

Lalaouna D., Baude J., Wu Z., Tomasini A., Chicher J., Marzi S., Vandenesch F., Romby P., Caldelari I., Moreau K.
RsaC sRNA modulates the oxidative stress response of Staphylococcus aureus during manganese starvation
Nucleic Acids Res 2019, 47(18), 9871-9887

Leonarski F., D'Ascenzo L., Auffinger P.
Nucleobase carbonyl groups are poor Mg2+ inner-sphere binders but excellent monovalent ion binders - A critical PDB survey
RNA 2019, 25(2), 173-192

Lopez P., Girardi E., Pfeffer S.
[Importance of cellular microRNAs in the regulation of viral infections]
Med Sci (Paris) 2019, 35(8-9), 667-673

Lyonnais S., Sadiq S. K., Lorca-Oró C., Dufau L., Nieto-Marquez S., Escriba T., Gabrielli N., Tan X., Ouizougun-Oubari M., Okoronkwo J., Reboud-Ravaux M., Gatell J. M., Marquet R., Paillart J.C., Meyerhans A., Tisné C., Gorelick R.J., Mirambeau G.
The HIV-1 ribonucleoprotein dynamically regulates its condensate behavior and drives acceleration of protease activity through membrane-less granular phase-separation
2019, BioRxiv 528638 [Preprint],

Mailler E., Paillart J.C., Marquet R., Smyth R.P., Vivet-Boudou V.
The evolution of RNA structural probing methods: From gels to next-generation sequencing
Wiley Interdiscip Rev RNA 2019, 10(2), e1518

Meyer B., da Veiga C., Dumas P., Ennifar E.
Thermodynamics of Molecular Machines Using Incremental ITC
In Methods in Molecular Biology. Microcalorimetry of Biological Molecules: Methods and Protocols (Ennifar E., Ed.) 2019, Vol. 1964, pp. 129-140, Springer Protocols, Humana Press , New York, NY

Munoz E., Sabin J., Rial J., Pérez D., Ennifar E., Dumas P., Pineiro A.
Thermodynamic and Kinetic Analysis of Isothermal Titration Calorimetry Experiments by Using KinITC in AFFINImeter
In Methods in Molecular Biology. Microcalorimetry of Biological Molecules: Methods and Protocols (Ennifar E., Ed.) 2019, Vol. 1964, pp. 225-239, Springer Protocols, Humana Press , New York, NY

Nigro G., Arena E.T., Sachse M., Moya-Nilges M., Marteyn B.S., Sansonetti P.J., Campbell-Valois F.X.
Mapping of Shigella flexneri's tissue distribution and type III secretion apparatus activity during infection of the large intestine of guinea pigs
Pathog Dis 2019, 77(7), ftz054

Pineiro A., Munoz E., Sabin J., Costas M., Bastos M., Velazquez-Campoy A., Garrido P.F., Dumas P., Ennifar E., Garcia-Rio L., Rial J., Pérez D., Fraga P., Rodriguez A., Cotelo C.
AFFINImeter: A software to analyze molecular recognition processes from experimental data
Anal Biochem 2019, 5(577), 117-134

Rozov A., Khusainov I., El Omari K., Duman R., Mykhaylyk V., Yusupov M., Westhof E., Wagner A., Yusupova G.
Importance of potassium ions for ribosome structure and function revealed by long-wavelength X-ray diffraction
Nat Commun 2019, 10(1), 2519

Ryckelynck M.
Development and engineering of artificial RNAs
Methods 2019, 161, 1-2

Salinas T., Farouk-Ameqrane S.E., Ubrig E., Sauter C., Duchêne A.M., Maréchal-Drouard L.
Molecular basis for the differential interaction of plant mitochondrial VDAC proteins with tRNAs
Nucleic Acids Res 2019, 47(2), 1048-1049

Schenckbecher E., Meyer B., Ennifar E.
ITC Studies of Ribosome/Antibiotics Interactions
In Methods in Molecular Biology. Microcalorimetry of Biological Molecules: Methods and Protocols (Ennifar E., Ed.) 2019, Vol. 1964, pp. 89-98, Springer Protocols, Humana Press , New York, NY

Shcherbakov D., Teo Y., Boukari H., Cortes-Sanchon A., Mantovani M., Osinnii I., Moore J., Juskeviciene R., Brilkova M., Duscha S., Kumar H.S., Laczko E., Rehrauer H., Westhof E., Akbergenov R., Böttger E.C.
Ribosomal mistranslation leads to silencing of the unfolded protein response and increased mitochondrial biogenesis
Commun Biol 2019, 2, 381

Spaety M.E., Gries A., Badie A., Venkatasamy A., Romain B., Orvain C., Yanagihara K., Okamoto K., Jung A.C., Mellitzer G., Pfeffer S., Gaiddon C.
HDAC4 Levels Control Sensibility toward Cisplatin in Gastric Cancer via the p53-p73/BIK Pathway
Cancers (Basel) 2019, 11(11), 1747

Trachman R.J. 3rd, Autour A., Jeng S.C.Y., Abdolahzadeh A., Andreoni A., Cojocaru R., Garipov R., Dolgosheina E.V., Knutson J.R., Ryckelynck M., Unrau P.J., Ferré-D'Amaré A.R.
Structure and functional reselection of the Mango-III fluorogenic RNA aptamer
Nat Chem Biol 2019, 15(5), 472-479

Urzhumtseva L., Urzhumtsev A.
py_convrot: rotation conventions, to understand and to apply
J Appl Cryst 2019, 52(4), 869-881

van der Knaap M.S., Bugiani M., Mendes M.I., Riley L.G., Smith D.E.C., Rudinger-Thirion J., Frugier M., Breur M., Crawford J., van Gaalen J., Schouten M., Willems M., Waisfisz Q., Mau-Them F.T., Rodenburg R.J., Taft R.J., Keren B., Christodoulou J., Depienne C., Simons C., Salomons G.S., Mochel F.
Biallelic variants in LARS2 and KARS cause deafness and (ovario)leukodystrophy
Neurology 2019, 92(11), e1225-e1237

Vicens Q., Coumoul X., Souciet J.L.
A forum where french-speaking faculty can exchange research on teaching
Biochem Mol Biol Educ 2019, 47(5), 599-606

Westhof E
Pseudouridines or how to draw on weak energy differences
Biochem Biophys Res Commun 2019, 520(4), 702-704

Westhof E., Yusupov M., Yusupova G.
The multiple flavors of GoU pairs in RNA
J Mol Recognit 2019, , e2782

Antoine L., Wolff P.
Mapping of Posttranscriptional tRNA Modifications by Two-Dimensional Gel Electrophoresis Mass Spectrometry
In Methods in Molecular Biology. RNA Spectroscopy: Methods and Protocols (Arluison V., Wien F., Eds.) 2020, Vol. 2113, pp. 101-110, Springer Protocols, Humana Press , New York, NY

Bernacchi S.
Dynamic Light Scattering Analysis on RNA Associated to Proteins
In Methods in Molecular Biology. RNA Spectroscopy: Methods and Protocols (Arluison V., Wien F., Eds.) 2020, Vol. 2113, pp. 31-39, Springer Protocols, Humana Press , New York, NY

Bernacchi S., Ennifar E.
Analysis of the HIV-1 Genomic RNA Dimerization Initiation Site Binding to Aminoglycoside Antibiotics Using Isothermal Titration Calorimetry
In Methods in Molecular Biology. RNA Spectroscopy: Methods and Protocols (Arluison V., Wien F., Eds.) 2020, Vol. 2113, pp. 237-250, Springer Protocols, Humana Press , New York, NY

Bouhedda F., Fam K.T., Collot M., Autour A., Marzi S., Klymchenko A., Ryckelynck M.
A dimerization-based fluorogenic dye-aptamer module for RNA imaging in live cells
Nat Chem Biol 2020, 16(1), 69-76

Boutant E., Bonzi J., Anton H., Bin Nasim M., Cathagne R., Real E., Dujardin D., Carl P., Didier P., Paillart J.C., Marquet R., Mely Y., de Rocquigny H., Bernacchi S.
Zinc Fingers in HIV-1 Gag Precursor Are Not Equivalent for gRNA Recruitment at the Plasma Membrane
Biophys J 2020, , in press

Brillet K., Martinez-Zapien D., Bec G., Ennifar E., Dock-Bregeon A.C., Lebars I.
Different Views of the Dynamic Landscape Covered by the 5'-hairpin of the 7SK Small Nuclear RNA
RNA 2020, , in press

de Wijn R., Rollet K., Engilberge S., McEwen A.G., Hennig O., Betat H., Mörl M., Riobé F., Maury O., Girard E, Bénas P., Lorber B., Sauter C.
Monitoring the Production of High Diffraction-Quality Crystals of Two Enzymes in Real Time Using In Situ Dynamic Light Scattering
Crystals 2020, 10(2), 65

Desgranges E., Caldelari I., Marzi S., Lalaouna D.
Navigation through the twists and turns of RNA sequencing technologies: Application to bacterial regulatory RNAs
Biochim Biophys Acta Gene Regul Mech 2020, 1863(3), 194506

Gasser C., Delazer I., Neuner E., Pascher K., Brillet K., Klotz S., Trixl L., Himmelstoß M., Ennifar E., Rieder D., Lusser A., Micura R.
Thioguanosine Conversion Enables mRNA-Lifetime Evaluation by RNA Sequencing Using Double Metabolic Labeling (TUC-seq DUAL)
Angew Chem Int Ed Engl 2020, 59(17), 6881-6886

Georg J., Lalaouna D., Hou S., Lott S.C., Caldelari I., Marzi S., Hess W.R., Romby P.
The power of cooperation: Experimental and computational approaches in the functional characterization of bacterial sRNAs
Mol Microbiol 2020, 113(3), 603-612

Herzog K., Bandiera S., Pernot S., Fauvelle C., Jühling F., Weiss A., Bull A., Durand S.C., Chane-Woon-Ming B., Pfeffer S., Mercey M., Lerat H., Meunier J.C., Raffelsberger W., Brino L., Baumert T.F., Zeisel M.B.
Functional microRNA screen uncovers O-linked N-acetylglucosamine transferase as a host factor modulating hepatitis C virus morphogenesis and infectivity
Gut 2020, 69(2), 380-392

Injarabian L., Scherlinger M., Devin A., Ransac S., Lykkesfeldt J., Marteyn B.S.
Ascorbate maintains a low plasma oxygen level
Sci Rep 2020, 10(1), 10659

Kruse H., Mrazikova K., D'Ascenzo L., Sponer J., Auffinger P.
Short but Weak! The Z-DNA lone-pair···π Conundrum Challenges Standard Carbon Van Der Waals Radii
Angew Chem Int Ed Engl 2020, , in press

Kruse H., Mrazikova K., D'Ascenzo L., Sponer J., Auffinger P.
Short but Weak: The Z-DNA Lone-Pair···π Conundrum Challenges Standard Carbon Van der Waals Radii
Angew Chem Int Ed Engl 2020, , in press

Lechner A., Wolff P., Leize-Wagner E., François Y.N.
Characterization of Post-Transcriptional RNA Modifications by Sheathless Capillary Electrophoresis-High Resolution Mass Spectrometry
Anal Chem 2020, 92(10), 7363-7370

Lopez P., Girardi E., Mounce B.C., Weiss A., Chane-Woon-Ming B., Messmer M., Kaukinen P., Kopp A., Bortolamiol-Becet D., Fendri A., Vignuzzi M., Brino L., Pfeffer S.
High-throughput Fluorescence-Based Screen Identifies the Neuronal microRNA miR-124 as a Positive Regulator of Alphavirus Infection
J Virol 2020, 94(9), e02145-19

Magnus M., Antczak M., Zok T., Wiedemann J., Lukasiak P., Cao Y., Bujnicki J.M., Westhof E., Szachniuk M., Miao Z.
RNA-Puzzles toolkit: a computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation tools
Nucleic Acids Res 2020, 48(2), 576-588

Menendez-Gil P., Caballero C.J., Catalan-Moreno A., Irurzun N., Barrio-Hernandez I., Caldelari I., Toledo-Arana A.
Differential evolution in 3'UTRs leads to specific gene expression in Staphylococcus
Nucleic Acids Res 2020, 48(5), 2544-2563

Miao Z., Adamiak R.W., Antczak M., Boniecki M.J., Bujnicki J.M., Chen S.J., Cheng C.Y., Cheng Y., Chou F.C., Das R., Dokholyan N.V., Ding F., Geniesse C., Jiang Y., Joshi A., Krokhotin A., Magnus M., Mailhot O., Major F., Mann T.H., Piatkowski P., Pluta R., Popenda M., Sarzynska J., Sun L., Szachniuk M., Tian S., Wang J., Wang J., Watkins A.M., Wiedemann J., Xiao Y., Xu X., Yesselman J.D., Zhang D., Zhang Y., Zhang Z., Zhao C., Zhao P., Zhou Y., Zok T., Zyla A., Ren A., Batey R.T., Golden B.L., Huang L., Lilley D.M., Liu Y., Patel D.J., Westhof E.
RNA-Puzzles Round IV: 3D Structure Predictions of Four Ribozymes and Two Aptamers
RNA 2020, 26(8), 982-995

Orlov I., Hemmer C., Ackerer L., Lorber B., Ghannam A., Poignavent V., Hleibieh K., Sauter C., Schmitt-Keichinger C., Belval L., Hily J.M., Marmonier A., Komar V., Gersch S., Schellenberger P., Bron P., Vigne E., Muyldermans S., Lemaire O., Demangeat G., Ritzenthaler C., Klaholz B.P.
Structural Basis of Nanobody Recognition of Grapevine Fanleaf Virus and of Virus Resistance Loss
Proc Natl Acad Sci U S A 2020, 117(20), 10848-10855

Pernod K., Schaeffer L., Chicher J., Hok E., Rick C., Geslain R., Eriani G., Westhof E., Ryckelynck M., Martin F.
The Nature of the Purine at Position 34 in tRNAs of 4-codon Boxes Is Correlated With Nucleotides at Positions 32 and 38 to Maintain Decoding Fidelity
Nucleic Acids Res 2020, 48(11), 6170-6183

Riley L.G., Rudinger-Thirion J., Frugier M., Wilson M., Luig M., Alahakoon T.I., Nixon C.Y., Kirk E.P., Roscioli T., Lunke S., Stark Z., Wierenga K.J., Palle S., Walsh M., Higgs E., Arbuckle S., Thirukeswaran S., Compton A.G., Thorburn D.R., Christodoulou J.
The Expanding LARS2 Phenotypic Spectrum: HLASA, Perrault Syndrome With Leukodystrophy, and Mitochondrial Myopathy
Hum Mutat 2020, , in press

Rol-Moreno J., Kuhn L., Marzi S., Simonetti A.
Grad-cryo-EM: Tool to Isolate Translation Initiation Complexes From Rabbit Reticulocyte Lysate Suitable for Structural Studies
In Methods in Molecular Biology. RNA Spectroscopy: Methods and Protocols (Arluison V., Wien F., Eds.) 2020, Vol. 2113, pp. 329-339, Springer Protocols, Humana Press , New York, NY

Simonetti A., Guca E., Bochler A., Kuhn L., Hashem Y.
Structural Insights Into the Mammalian Late-Stage Initiation Complexes
Cell Rep 2020, 31(1), 107497

Théobald-Dietrich A., de Wijn R., Rollet K., Bluhm A., Rudinger-Thirion J., Paulus C., Lorber B., Thureau A., Frugier M., Sauter C.
Structural Analysis of RNA by Small-Angle X-ray Scattering
In Methods in Molecular Biology. RNA Spectroscopy: Methods and Protocols (Arluison V., Wien F., Eds.) 2020, Vol. 2113, pp. 189-215, Springer Protocols, Humana Press , New York, NY

Trachman R.J. 3rd, Cojocaru R., Wu D., Piszczek G., Ryckelynck M., Unrau P.J., Ferré-D'Amaré A.R.
Structure-Guided Engineering of the Homodimeric Mango-IV Fluorescence Turn-on Aptamer Yields an RNA FRET Pair
Structure 2020, 28(7), 776-785.e3

Trzaska C., Amand S., Bailly C., Leroy C., Marchand V., Duvernois-Berthet E., Saliou J.M., Benhabiles H., Werkmeister E., Chassat T., Guilbert R., Hannebique D., Mouray A., Copin M.C., Moreau P.A., Adriaenssens E., Kulozik A., Westhof E., Tulasne D., Motorin Y., Rebuffat S., Lejeune F.
2,6-Diaminopurine as a Highly Potent Corrector of UGA Nonsense Mutations
Nat Commun 2020, 11(1), 1509

Vigouroux A., Aumont-Nicaise M., Boussac A., Marty L., Lo Bello L., Legrand P., Brillet K., Schalk I.J., Moréra S.
A unique ferrous iron binding mode is associated to large conformational changes for the transport protein FpvC of Pseudomonas aeruginosa
FEBS J 2020, 287(2), 295-309

Vileno B., Lebars I.
Site-Specific Spin Labeling of RNA for NMR and EPR Structural Studies
In Methods in Molecular Biology. RNA Spectroscopy: Methods and Protocols (Arluison V., Wien F., Eds.) 2020, Vol. 2113, pp. 217-235, Springer Protocols, Humana Press , New York, NY

Werner S., Schmidt L., Marchand V., Kemmer T., Falschlunger C., Sednev M.V., Bec G., Ennifar E., Höbartner C., Micura R., Motorin Y., Hildebrandt A., Helm M.
Machine Learning of Reverse Transcription Signatures of Variegated Polymerases Allows Mapping and Discrimination of Methylated Purines in Limited Transcriptomes
Nucleic Acids Res 2020, 48(7), 3734-3746

Wolff P., Ennifar E.
Native Electrospray Ionization Mass Spectrometry of RNA-Ligand Complexes
In Methods in Molecular Biology. RNA Spectroscopy: Methods and Protocols (Arluison V., Wien F., Eds.) 2020, Vol. 2113, pp. 111-118, Springer Protocols, Humana Press , New York, NY