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Publications de l'ARN depuis 1992



Alsaleh G., Nehmar R., Blüml S., Schleiss C., Ostermann E., Dillenseger J.P., Sayeh A., Choquet P., Dembele D., Francois A., Salmon J.H., Paul N., Schabbauer G., Bierry G., Meyer A., Gottenberg J.E., Haas G., Pfeffer S., Vallat L., Sibilia J., Bahram S., Georgel P.
Reduced DICER1 expression bestows rheumatoid arthritis synoviocytes proinflammatory properties and resistance to apoptotic stimuli.
Arthritis Rheumatol 2016, 68(8), 1839-48

Auffinger P., D'Ascenzo L., Ennifar E.
Sodium and Potassium Interactions with Nucleic Acids
The Alkali Metal Ions: Their Role for Life (Sigel A., Sigel H., Sigel R. , Eds.) 2016, Vol. 16, pp. 167-201 , Springer , New York

Autour A., Westhof E., Ryckelynck M.
iSpinach: a fluorogenic RNA aptamer optimized for in vitro applications.
Nucleic Acids Res 2016, 44(6), 2491-500

Belval L., Hemmer C., Sauter C., Reinbold C., Fauny J.D., Berthold F., Ackerer L., Schmitt-Keichinger C., Lemaire O., Demangeat G., Ritzenthaler C.
Display of whole proteins on inner and outer surfaces of Grapevine fanleaf virus-like particles.
Plant Biotechnol J 2016, 14(12), 2288-2299

Bour T., Mahmoudi N., Kapps D., Thiberge S., Bargieri D., Ménard R., Frugier M.
Apicomplexa-specific tRip facilitates import of exogenous tRNAs into malaria parasites
Proc Natl Acad Sci U S A 2016, 113(17), 4717-22

Bronesky D., Wu Z., Marzi S., Walter P., Geissmann T., Moreau K., Vandenesch F., Caldelari I., Romby P.
Staphylococcus aureus RNAIII and Its Regulon Link Quorum Sensing, Stress Responses, Metabolic Adaptation, and Regulation of Virulence Gene Expression.
Annu Rev Microbiol 2016, 70, 299-316

Challier L., Miranda-Castro R., Barbe B., Fave C., Limoges B., Peyrin E., Ravelet C., Fiore E., Labbé P., Coche-Guérente L., Ennifar E., Bec G., Dumas P., Mavré F., Noël V.
Multianalytical Study of the Binding between a Small Chiral Molecule and a DNA Aptamer: Evidence for Asymmetric Steric Effect upon 3'- versus 5'-End Sequence Modification.
Anal Chem 2016, 88(23), 11963-11971

Chikne V., Doniger T., Rajan K.S., Bartok O., Eliaz D., Cohen-Chalamish S., Tschudi C., Unger R., Hashem Y., Kadener S., Michaeli S.
A pseudouridylation switch in rRNA is implicated in ribosome function during the life cycle of Trypanosoma brucei.
Sci Rep 2016, 6, 25296

Costa M., Walbott H., Monachello D., Westhof E., Michel F.
Crystal structures of a group II intron lariat primed for reverse splicing.
Science 2016, 354(6316), aaf9258

Cromer D., Schlub T.E., Smyth R.P., Grimm A.J., Chopra A., Mallal S., Davenport M.P., Mak J.
HIV-1 mutation and recombination rates are different in macrophages and T-cells
Viruses 2016, 8(4), 118

Da Veiga C., Mezher J., Dumas P., Ennifar E.
Isothermal Titration Calorimetry: Assisted Crystallization of RNA-Ligand Complexes
Nucleic Acid Crystallography: Methods and Protocols (Ennifar E. , Ed.) 2016, Vol. 1320, pp. 127-143 , Humana Press , NY

D'Ascenzo L., Auffinger P.
Anions in Nucleic Acid Crystallography
Nucleic Acid Crystallography: Methods and Protocols (Ennifar E. , Ed.) 2016, Vol. 1320, pp. 337-351 , Humana Press , NY

D'Ascenzo L., Leonarski F., Vicens Q., Auffinger P.
'Z-DNA like' fragments in RNA: a recurring structural motif with implications for folding, RNA/protein recognition and immune response.
Nucleic Acids Res 2016, 44(12), 5944-56

Dumas P., Ennifar E., Da Veiga C., Bec G., Palau W., Di Primo C., Piñeiro A., Sabin J., Muñoz E., Rial J.
Extending ITC to Kinetics with kinITC.
Methods Enzymol 2016, 567, 157-80

Enkler L., Richer D., Marchand A.L., Ferrandon D., Jossinet F.
Genome engineering in the yeast pathogen Candida glabrata using the CRISPR-Cas9 system.
Sci Rep 2016, 6, 35766

Ennifar E. , Ed.
Nucleic Acid Crystallography: Methods and Protocols
Methods in Molecular Biology 2016, Vol. 1320, Humana Press , NY

Fechter P., Parmentier D., Wu Z., Fuchsbauer O., Romby P., Marzi S.
Traditional Chemical Mapping of RNA Structure In Vitro and In Vivo.
Methods Mol Biol 2016, 1490, 83-103

Fernandez-Millan P., Schelcher C., Chihade J., Masquida B., Giegé P., Sauter C.
Transfer RNA: from pioneering crystallographic studies to contemporary tRNA biology.
Arch Biochem Biophys 2016, 602, 95-105

Gasser R., Hamoudi M., Pellicciotta M., Zhou Z., Visdeloup C., Colin P., Braibant M., Lagane B., Negroni M.
Buffering deleterious polymorphisms in highly constrained parts of HIV-1 envelope by flexible regions.
Retrovirology 2016, 13(1), 50

Giegé R., Springer M.
Aminoacyl-tRNA Synthetases in the Bacterial World.
EcoSal Plus 2016, 7(1), none

Gilbertson B., Zheng T., Gerber M., Printz-Schweigert A., Ong C., Marquet R., Isel C., Rockman S., Bown L.
Influenza NA and PB1 Gene Segments Interact during the Formation of Viral Progeny: Localization of the Binding Region within the PB1 Gene.
Viruses 2016, 8(8), 238

Gladyshev V.N., Arnér E.S., Berry M.J., Brigelius-Flohé R., Bruford E.A., Burk R.F., Carlson B.A., Castellano S., Chavatte L., Conrad M., Copeland P.R., Diamond A.M., Driscoll D.M., Ferreiro A., Flohé L., Green F.R., Guigó R., Handy D.E., Hatfield D.L., Hesketh J., Hoffmann P.R., Holmgren A., Hondal R.J., Howard M.T., Huang K., Kim H.Y., Kim I.Y., Köhrle J., Krol A., Kryukov G.V., Lee B.J., Lee B.C., Lei X.G., Liu Q., Lescure A., Lobanov A.V., Loscalzo J., Maiorino M., Mariotti M., Prabhu K.S., Rayman M.P., Rozovsky S., Salinas G., Schomburg L., Schweizer U., Simonović M., Sunde R.A., Tsuji P.A., Tweedie S., Ursini F., Zhang Y.
Selenoprotein Gene Nomenclature.
J Biol Chem 2016, 291(46), 24036-24040

Grosjean H., Westhof E.
An integrated, structure- and energy-based view of the genetic code.
Nucleic Acids Res 2016, 44(17), 8020-40

Guedich S., Puffer-Enders B., Baltzinger M., Hoffmann G., Da Veiga C., Jossinet F., Thore S., Bec G., Ennifar E., Burnouf D., Dumas P.
Quantitative and predictive model of kinetic regulation by E. coli TPP riboswitches.
RNA Biol 2016, 13(4), 373-90

Guerrero S.X., Libre C., Batisse J., Mercenne G., Richer D., Laumond G., Decoville T., Moog C., Marquet R., Paillart J.C.
Translational regulation of APOBEC3G mRNA by Vif requires its 5′UTR and contributes to restoring HIV-1 infectivity
Sci Rep 2016, 6, 39507

Haar J., Contrant M., Bernhardt K., Feederle R., Diederichs S., Pfeffer S., Delecluse H.J.
The expression of a viral microRNA is regulated by clustering to allow optimal B cell transformation.
Nucleic Acids Res 2016, 44(3), 1326-41

Haas G., Cetin S., Messmer M., Chane-Woon-Ming B., Terenzi O., Chicher J., Kuhn L., Hammann P., Pfeffer S.
Identification of factors involved in target RNA-directed microRNA degradation.
Nucleic Acids Res 2016, 44(6), 2873-87

Isel C., Munier S., Naffakh N.
Experimental Approaches to Study Genome Packaging of Influenza A Viruses.
Viruses 2016, 8(8), 218

Kalloush R.M., Vivet-Boudou V., Ali L.M., Mustafa F., Marquet R., Rizvi T.A.
Packaging of Mason-Pfizer monkey virus (MPMV) genomic RNA depends upon conserved long-range interactions (LRIs) between U5 and gag sequences.
RNA 2016, 22(6), 905-19

Kapps D., Cela M., Théobald-Dietrich A., Hendrickson T., Frugier M.
OB or Not OB: Idiosyncratic utilization of the tRNA-binding OB-fold domain in unicellular, pathogenic eukaryotes.
FEBS Lett 2016, 590(23), 4180-4191

Khusainov I., Marenna A., Cerciat M., Fechter P., Hashem Y., Marzi S., Romby P., Yusupova G., Yusupov M.
[A glimpse on Staphylococcus aureus translation machinery and its control].
Mol Biol (Mosk) 2016, 50(4), 549-557. Russian

Khusainov I., Vicens Q., Bochler A., Grosse F., Myasnikov A., Ménétret J.F., Chicher J., Marzi S., Romby P., Yusupova G., Yusupov M., Hashem Y.
Structure of the 70S ribosome from human pathogen Staphylococcus aureus.
Nucleic Acids Res 2016, 44(21), 10491-10504

Kowalska J., Martin F., Jemielity J.
Synthetic Capped mRNAs for Cap-Specific Photo-Cross-Linking Experiments.
Methods Mol Biol 2016, 1428, 31-43

Latrick C.M., Marek M., Ouararhni K., Papin C., Stoll I., Ignatyeva M., Obri A., Ennifar E., Dimitrov S., Romier C., Hamiche A.
Molecular basis and specificity of H2A.Z-H2B recognition and deposition by the histone chaperone YL1.
Nat Struct Mol Biol 2016, 23(4), 309-16

Lescure A., Briens M., Ferreiro A.
What do we know about selenium contribution to muscle physiology?
Selenium: Its molecular biology and role in human health (Hatfield D.L., Schweizer U., Tsuji P.A., Gladyshev V. , Eds.) 2016, pp. 475-486 , Springer

Lioliou E., Fechter P., Caldelari I., Jester B.C., Dubrac S., Helfer A.C., Boisset S., Vandenesch F., Romby P., Geissmann T.
Various checkpoints prevent the synthesis of Staphylococcus aureus peptidoglycan hydrolase LytM in the stationary growth phase.
RNA Biol 2016, 13(4), 427-40

Mailler E., Bernacchi S., Marquet R., Paillart J.C., Vivet-Boudou V., Smyth R.P.
The life-cycle of the HIV-1 Gag-RNA complex.
Viruses 2016, 8(9), 248

Martin F., Ménétret J.F., Simonetti A., Myasnikov A.G., Vicens Q., Prongidi-Fix L., Natchiar S.K., Klaholz B.P., Eriani G.
Ribosomal 18S rRNA base pairs with mRNA during eukaryotic translation initiation.
Nat Commun 2016, 7, 12622

Matsumura S., Kun Á., Ryckelynck M., Coldren F., Szilágyi A., Jossinet F., Rick C., Nghe P., Szathmáry E., Griffiths A.D.
Transient compartmentalization of RNA replicators prevents extinction due to parasites.
Science 2016, 354(6317), 1293-1296

McShane A., Hok E., Tomberlin J., Eriani G., Geslain R.
The Enzymatic Paradox of Yeast Arginyl-tRNA Synthetase: Exclusive Arginine Transfer Controlled by a Flexible Mechanism of tRNA Recognition.
PLoS One 2016, 11(2), e0148460

Mekdad H.E., Boutant E., Karnib H., Biedma M.E., Sharma K.K., Malytska I., Laumond G., Roy M., Réal E., Paillart J.C., Moog C., Darlix J.L., Mély Y., de Rocquigny H.
Characterization of the interaction between the HIV-1 Gag structural polyprotein and the cellular ribosomal protein L7 and its implication in viral nucleic acid remodeling.
Retrovirology 2016, 13(1), 54

Miao Z., Cao Y.
Quantifying side-chain conformational variations in protein structure.
Sci Rep 2016, 6, 37024

Miao Z., Westhof E.
RBscore&NBench: a high-level web server for nucleic acid binding residues prediction with a large-scale benchmarking database.
Nucleic Acids Res 2016, 44(W1), W562-W567

Morfoisse F., Tatin F., Hantelys F., Adoue A., Helfer A.C., Cassant-Sourdy S., Pujol F., Gomez-Brouchet A., Ligat L., Lopez F., Pyronnet S., Courty J., Guillermet-Guibert J., Marzi S., Schneider R.J., Prats A.C., Garmy-Susini B.H.
Nucleolin promotes heat shock-associated translation of VEGF-D to promote tumor lymphangiogenesis.
Cancer Res 2016, 76(15), 4394-405

Racine P.J., Chamontin C., de Rocquigny H., Bernacchi S., Paillart J.C., Mougel M.
Requirements for nucleocapsid-mediated regulation of reverse transcription during the late steps of HIV-1 assembly.
Sci Rep 2016, 6, 27536

Riley L.G., Rudinger-Thirion J., Schmitz-Abe K., Thorburn D.R., Davis R.L., Teo J., Arbuckle S., Cooper S.T., Campagna D.R., Frugier M., Markianos K., Sue C.M., Fleming M.D., Christodoulou J.
LARS2 Variants Associated with Hydrops, Lactic Acidosis, Sideroblastic Anemia, and Multisystem Failure.
JIMD Rep 2016, 28, 49-57

Rozov A., Demeshkina N., Khusainov I., Westhof E., Yusupov M., Yusupova G.
Novel base-pairing interactions at the tRNA wobble position crucial for accurate reading of the genetic code.
Nat Commun 2016, 21(7), 10457

Rozov A., Demeshkina N., Westhof E., Yusupov M., Yusupova G.
New Structural Insights into Translational Miscoding.
Trends Biochem Sci 2016, 41(9), 798-814

Rozov A., Westhof E., Yusupov M., Yusupova G.
The ribosome prohibits the G•U wobble geometry at the first position of the codon-anticodon helix.
Nucleic Acids Res 2016, 44(13), 6434-41

Schelcher C., Sauter C., Giegé P.
Mechanistic and Structural Studies of Protein-Only RNase P Compared to Ribonucleoproteins Reveal the Two Faces of the Same Enzymatic Activity.
Biomolecules 2016, 6(3), 30

Simonetti A., Brito Querido J., Myasnikov A., Mancera-Martinez E., Renaud A., Kuhn L., Hashem Y.
eIF3 Peripheral Subunits Rearrangement after mRNA Binding and Start-Codon Recognition.
Mol Cell 2016, 63(2), 206-17

Sissler M.
What is so special about neuronal translation? (comment on DOI 10.1002/bies.201600052).
Bioessays 2016, 38(9), 816

Smith M.R., Smyth R.P., Marquet R., von Kleist M.
MIMEAnTo - Profiling functional RNA in Mutational Interference Mapping Experiments.
Bioinformatics 2016, 32(21), 3369-3370

Smyth R.P., Negroni M.
A step forward understanding HIV-1 diversity
Retrovirology 2016, 13(1), 27

Stephen P., Lin S.X., Giegè R.
Interplay between Catalysts and Substrates for Activity of Class Ib Aminoacyl-tRNA Synthetases and Implications for Pharmacology.
Curr Top Med Chem 2016, 16(6), 616-33

Storm Mollerup M., Ross J.A., Helfer A.C., Meistrup K., Romby P., Kallipolitis B.H.
Two novel members of the LhrC family of small RNAs in Listeria monocytogenes with overlapping regulatory functions but distinctive expression profiles.
RNA Biol 2016, 13(9), 895-915

Urzhumtsev A., Urzhumtseva L., Baumann U.
Helical Symmetry of Nucleic Acids: Obstacle or Help in Structure Solution?
Nucleic Acid Crystallography: Methods and Protocols (Ennifar E. , Ed.) 2016, Vol. 1320, pp. 259-267 , Humana Press , NY

Urzhumtseva L., Urzhumtsev A.
COMPaRS: a stand-alone program for map comparison using quantile rank scaling
J Appl Cryst 2016, 49(6), 2270-2275

Wang M., Liu H., Zheng J., Chen B., Zhou M., Fan W., Wang H., Liang X., Zhou X., Eriani G., Jiang P., Guan M.X.
A deafness and diabetes associated tRNA mutation caused the deficient pseudouridinylation at position 55 in tRNAGlu and mitochondrial dysfunction.
J Biol Chem 2016, 291(40), 21029-21041

Wang Y., Zhou X.L., Ruan Z.R., Liu R.J., Eriani G., Wang E.D.
A Human Disease-causing Point Mutation in Mitochondrial Threonyl-tRNA Synthetase Induces Both Structural and Functional Defects.
J Biol Chem 2016, 291(12), 6507-20

Westhof E
Perspectives and Pitfalls in Nucleic Acids Crystallography
Nucleic Acid Crystallography: Methods and Protocols (Ennifar E. , Ed.) 2016, Vol. 1320, pp. 3-8 , Humana Press , NY

Bernacchi S., Abd El-Wahab E.W., Dubois N., Hijnen M., Smyth R.P., Mak J., Marquet R., Paillart J.C.
HIV-1 Pr55Gag binds genomic and spliced RNAs with different affinity and stoechiometry.
RNA Biol 2017, 14(90), 103

Carapito C., Kuhn L., Karim L., Rompais M., Rabilloud T., Schwenzer H., Sissler M.
Two proteomic methodologies for defining N-termini of mature human mitochondrial aminoacyl-tRNA synthetases.
Methods 2017, 113, 111-119

D'Ascenzo L., Leonarski F., Vicens Q., Auffinger P.
Revisiting GNRA and UNCG folds: U-turns versus Z-turns in RNA hairpin loops.
RNA 2017, 23(3), 259-269

Debard S., Bader G., De Craene J.O., Enkler L., Bär S., Laporte D., Myslinski E., Senger B., Friant S., Dominique Becker H.
Nonconventional localizations of cytosolic aminoacyl-tRNA synthetases in yeast and human cells.
Methods 2017, 113, 91-104

Durand S., Braun F., Helfer A.C., Romby P., Condon C.
sRNA-mediated activation of gene expression by inhibition of 5'-3' exonucleolytic mRNA degradation.
Elife 2017, 6, e23602

Duval M., Marenna A., Chevalier C., Marzi S.
Site-Directed Chemical Probing to map transient RNA/protein interactions.
Methods 2017, 117, 48-58

Eckenfelder A., Ségéral E., Pinzon N., Ulveling D., Amadori C., Charpentier M., Nidelet S., Concordet J.P., Zagury J.F., Paillart J.C., Berlioz-Torrent C., Seitz H., Emiliani S., Gallois-Montbrun S.
Argonaute proteins regulate HIV-1 multiply spliced RNA and viral production in a Dicer independent manner.
Nucleic Acids Res 2017, 45(7), 4158-4173

Edelmann F.T., Schlundt A., Heym R.G., Jenner A., Niedner-Boblenz A., Syed M.I., Paillart J.C., Stehle R., Janowski R., Sattler M., Jansen R.P., Niessing D.
Molecular architecture and dynamics of ASH1-mRNA recognition by its mRNA-transport complex
Nat Struct Mol Biol 2017, 24(2), 152-161

Gribling-Burrer A.S., Leichter M., Wurth L., Huttin A., Schlotter F., Troffer-Charlier N., Cura V., Barkats M., Cavarelli J., Massenet S., Allmang C.
SECIS-binding protein 2 interacts with the SMN complex and the methylosome for selenoprotein mRNP assembly and translation.
Nucleic Acids Res 2017, 45(9), 5399-5413

Haimov O., Sinvani H., Martin F., Ulitsky I., Emmanuel R., Tamarkin-Ben-Harush A., Vardy A., Dikstein R.
Efficient and accurate translation initiation directed by TISU involves RPS3 and RPS10e binding and differential eIF1A regulation.
Mol Cell Biol 2017, , in press

Khusainov I., Vicens Q., Ayupov R., Usachev K., Myasnikov A., Simonetti A., Validov S., Kieffer B., Yusupova G., Yusupov M., Hashem Y.
Structures and dynamics of hibernating ribosomes from Staphylococcus aureus mediated by intermolecular interactions of HPF.
EMBO J 2017, , in press

Khusainov I., Vicens Q., Bochler A., Grosse F., Myasnikov A., Ménétret J.F., Chicher J., Marzi S., Romby P., Yusupova G., Yusupov M., Hashem Y.
Structure of the 70S ribosome from human pathogen Staphylococcus aureus.
Nucleic Acids Res 2017, 45(2), 1026

Lai L.B., Tanimoto A., Lai S.M., Chen W.Y., Marathe I.A., Westhof E., Wysocki V.H., Gopalan V.
A novel double kink-turn module in euryarchaeal RNase P RNAs.
Nucleic Acids Res 2017, , in press

Leonarski F., D'Ascenzo L., Auffinger P.
Mg2+ ions: do they bind to nucleobase nitrogens?
Nucleic Acids Res 2017, 45(2), 987-1004

Mancera-Martínez E., Brito Querido J., Valasek L.S., Simonetti A., Hashem Y.
ABCE1: A special factor that orchestrates translation at the crossroad between recycling and initiation.
RNA Biol 2017, , in press

Miao Z., Adamiak R.W., Antczak M., Batey R.T., Becka A.J., Biesiada M., Boniecki M.J., Bujnicki J., Chen S.J., Cheng C.Y., Chou F.C., Ferré-D'Amaré A.R., Das R., Dawson W.K., Feng D., Dokholyan N.V., Dunin-Horkawicz S., Geniesse C., Kappel K., Kladwang W., Krokhotin A., Łach G.E., Major F., Mann T.H., Magnus M., Pachulska-Wieczorek K., Patel D.J., Piccirilli J.A., Popenda M., Purzycka K.J., Ren A., Rice G.M., Santalucia J. Jr., Sarzynska J., Szachniuk M., Tandon A., Trausch J.J., Tian S., Wang J., Weeks K.M., Williams B. 2nd., Xiao Y., Xu X., Zhang D., Zok T., Westhof E.
RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme.
RNA 2017, 23(5), 655-672

Miao Z., Westhof E.
RNA Structure: Advances and Assessment of 3D Structure Prediction.
Annu Rev Biophys 2017, 46, 483-503

Moulinier L., Ripp R., Castillo G., Poch O., Sissler M.
MiSynPat: an integrated knowledge base linking clinical, genetic, and structural data for disease-causing mutations in human mitochondrial aminoacyl-tRNA synthetases.
Hum Mutat 2017, , in press

Schellenberger P., Sauter C., Lorber B., Bron P., Trapani S., Bergdoll M., Marmonier A., Schmitt-Kelchinger C., Lemaire O., Demangeat G., Ritzenthaler C.
Correction: Structural Insights into Viral Determinants of Nematode Mediated Grapevine fanleaf virus Transmission.
PLoS Pathog 2017, 13(3), e1006268

Tomasini A., Moreau K., Chicher J., Geissmann T., Vandenesch F., Romby P., Marzi S., Caldelari I.
The RNA targetome of Staphylococcus aureus non-coding RNA RsaA: impact on cell surface properties and defense mechanisms.
Nucleic Acids Res 2017, , in press

Wolff P., Da Veiga C., Ennifar E., Bec G., Guichard G., Burnouf D., Dumas P.
Native ESI Mass Spectrometry Can Help to Avoid Wrong Interpretations from Isothermal Titration Calorimetry in Difficult Situations.
J Am Soc Mass Spectrom 2017, 28(2), 347-357